PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0341s00002.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 240aa    MW: 26239.9 Da    PI: 8.7315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0341s00002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.5e-13193218126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           y  +lC+++ +tG+C+yGd+CkF+H+
  Dusal.0341s00002.1.p 193 YNPSLCKDYKETGFCSYGDSCKFMHD 218
                           5678*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.23E-9190224IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-11193218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDPPGPEQAG PGPSSEAAAA EAGKQQAAQA AKFAPKRNRG NIRKRPDAPG PSEGEATAQE  60
EGGGEQGVMR QSKVPRAGEP LAFTSKRDGA EEVHVTYESS RAIQSGKDNK VTAYLETETD  120
TSRDARALRE AKLRQGTEEG KPVNDGKYKG MNNYIDYRAG FRSEHSVASE KGRGAHGPLR  180
ASMYVRSTSI MDYNPSLCKD YKETGFCSYG DSCKFMHDRG DYKMSWELDR VRSWTSIRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-269523098234RING finger protein 113A
5z58_M2e-269523098234RING finger protein 113A
6ff4_t2e-269523098234RING finger protein 113A
6ff7_t2e-269523098234RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001696382.14e-67predicted protein
SwissprotQ6K4V31e-52C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2K3DMB18e-69A0A2K3DMB1_CHLRE; Uncharacterized protein
STRINGEDP083591e-66(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.13e-48C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]