PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0400s00013.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family MYB
Protein Properties Length: 122aa    MW: 13992.9 Da    PI: 10.9841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0400s00013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.4e-16448348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           WT++Ed +l ++v+++G++ W++Ia+++g  +  kq++ rw+++l
  Dusal.0400s00013.1.p  4 VWTEQEDAKLRELVAEYGSKKWSLIAQKLG-SKGSKQIRRRWNNVL 48
                          5*****************************.999*********986 PP
2Myb_DNA-binding55.21.7e-175596245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                          g W+ eEd  l+++++++G++ W++Ia+++g gRt++ +k+rw+
  Dusal.0400s00013.1.p 55 GGWSLEEDRVLLEGHQKYGNK-WTKIAEMVG-GRTDNAVKNRWH 96
                          56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-13150IPR001005SANT/Myb domain
PROSITE profilePS5129416.767148IPR017930Myb domain
PfamPF002492.7E-15448IPR001005SANT/Myb domain
SuperFamilySSF466895.5E-28495IPR009057Homeodomain-like
CDDcd001675.53E-13548No hitNo description
Gene3DG3DSA:1.10.10.608.2E-22555IPR009057Homeodomain-like
PROSITE profilePS5129421.9249103IPR017930Myb domain
SMARTSM007172.5E-1653101IPR001005SANT/Myb domain
PfamPF002492.0E-165596IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2156101IPR009057Homeodomain-like
CDDcd001672.25E-115798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MACVWTEQED AKLRELVAEY GSKKWSLIAQ KLGSKGSKQI RRRWNNVLNA DNKQGGWSLE  60
EDRVLLEGHQ KYGNKWTKIA EMVGGRTDNA VKNRWHALCK RGDQPPGSRR SRTKRVRHNH  120
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30510110106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114RSRTKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699782.11e-42myb family transcription factor, partial
TrEMBLA0A2K3E2F14e-44A0A2K3E2F1_CHLRE; Uncharacterized protein
STRINGEDP074784e-42(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.28e-32myb domain protein 88