PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Dusal.0407s00007.1.p

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

Protein Properties

Length: 212aa MW: 23403.3 Da PI: 5.3036

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.0407s00007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	21	9.6e-07	85	139	111	165
YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + + + P+ +r say f ++ ika+nP++ e s k W +P+ Dusal.0407s00007.1.p 85 KGEKKKKDPNAPKRGLSAYMFFCQDMRDTIKAENPEMKVTEVTSELGKQWKELPE 139 23345788999999***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	2.09E-29	88	168	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.6E-27	94	167	IPR009071	High mobility group box domain
SMART	SM00398	1.3E-27	95	165	IPR009071	High mobility group box domain
Pfam	PF00505	5.3E-26	96	164	IPR009071	High mobility group box domain
PROSITE profile	PS50118	21.004	96	164	IPR009071	High mobility group box domain
CDD	cd01390	2.48E-25	96	161	No hit	No description
PRINTS	PR00886	4.1E-7	111	129	No hit	No description
PRINTS	PR00886	4.1E-7	129	148	No hit	No description
PRINTS	PR00886	4.1E-7	148	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MCAFMDTFAL CVVVQEAPDL QWVHIHLAER PPVAGLEGIA AGTNPRTYDP LAGQPLGTCL 60 QTGTLTNMPK AAATKKQAPK AKPEKGEKKK KDPNAPKRGL SAYMFFCQDM RDTIKAENPE 120 MKVTEVTSEL GKQWKELPES EKKQYHDRAA QDKKRYEEES KNYKPPAGEA SGKKATPKKA 180 PAKDKGKKRE ESPAADEGGE EEEEEEEEDD E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cg7_A	9e-19	92	163	17	88	PROTEIN (NON HISTONE PROTEIN 6 A)
1j5n_A	9e-19	92	163	17	88	Nonhistone chromosomal protein 6A
1lwm_A	9e-19	92	163	17	88	NONHISTONE CHROMOSOMAL PROTEIN 6A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A286U7Z8	6e-27	A0A286U7Z8_9AGAM; HMG-box

Link Out ? help Back to Top
Phytozome	Dusal.0407s00007.1.p