PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0426s00007.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family LSD
Protein Properties Length: 255aa    MW: 26615.9 Da    PI: 7.0871
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0426s00007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.64e-133559125
               zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                          CggC+tlL+YP GA +VRC+ C ++
  Dusal.0426s00007.1.p 35 CGGCHTLLMYPQGAGNVRCSRCTHI 59
                          **********************997 PP
2zf-LSD143.17.1e-147498125
               zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                          C+gCr+lLsYP GA sV+C++C+ V
  Dusal.0426s00007.1.p 74 CNGCRVLLSYPKGAQSVQCSMCHVV 98
                          ***********************98 PP
3zf-LSD145.51.2e-14109133125
               zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                           CggC ++L+YP+GA sV+C++C++V
  Dusal.0426s00007.1.p 109 CGGCSIMLMYPTGAESVKCSVCHHV 133
                           ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.5E-113260IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.77E-634131IPR011031Multihaem cytochrome
PfamPF069434.9E-123559IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.9E-1371101IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-117498IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.2E-12106134IPR005735Zinc finger, LSD1-type
PfamPF069432.7E-12109133IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSTPPHVNTS PPLPPMPIPL FIPPGGPKPH SHLECGGCHT LLMYPQGAGN VRCSRCTHIT  60
PVPHASTEAA QIVCNGCRVL LSYPKGAQSV QCSMCHVVTQ VPAYGHLVCG GCSIMLMYPT  120
GAESVKCSVC HHVTGVESVQ QQQQQQQQQQ QQQQQQQQPP PSDAPPPPSS SKEDKGGGSS  180
SAGPADAAPL QSLEGRVNAE GARAGAWHGM QQQEQQLPKE GIAGAGHREA GADKSQPQNS  240
TTGEVPNLEA SVKN*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-30lsd one like 1