PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0509s00012.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 87aa    MW: 9082.15 Da    PI: 8.8093
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0509s00012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH443.8e-142852227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          kt+lC+++++ G C++GdrC+FaHg+
  Dusal.0509s00012.1.p 28 KTKLCNRWMQ-GDCRFGDRCNFAHGE 52
                          8*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-162557IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-102657IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.6522653IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-72652IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-112852IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MDGAFPSDPA SFRGGGSAGF RGTAENAKTK LCNRWMQGDC RFGDRCNFAH GEQELRPLTG  60
GGFDMGGRGA FPGRVRKNGP CNCPPA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001703693.12e-18RNA binding protein
TrEMBLA8JIB85e-17A8JIB8_CHLRE; RNA binding protein
STRINGEDO963848e-18(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP569077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-11C3H family protein