PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0591s00005.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 259aa    MW: 27382.9 Da    PI: 8.3171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0591s00005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-09219241325
                           S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                            + C+f++ +G C  G+ CkF H
  Dusal.0591s00005.1.p 219 KPVCKFWQNSGRCAAGAACKFLH 241
                           589******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.50.1402.1E-4270IPR012340Nucleic acid-binding, OB-fold
SMARTSM003560.0048216243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155216244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5219243IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6219241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5221241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEQIEIQGQV VHRRSISRRL LFIDVAVTST PEPCFMELVV KLDAIGSENA VRGVKDSVRL  60
GDVVRAKGFL DQLGSCVVQA LDVISKWCHS ELGKEGIQFI VDEAAQKWCA ARPQRVQQQQ  120
QQQLPASHHE TSGDVGHVQH AAAGSTGLER PEPRAAAGAV GQVLASTSGA PTSAPPGAPT  180
STSTSTSMPG AHTFPLQEAF ASVSASPPGA PMSTAKPAKP VCKFWQNSGR CAAGAACKFL  240
HLSHAERAQT HQAYHQQR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP348811