PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0728s00006.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family NF-YB
Protein Properties Length: 186aa    MW: 20091.4 Da    PI: 4.5339
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0728s00006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB59.76.9e-19897492
                 NF-YB  4 qdrflPianvsrimkkvlPan.akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                          ++ +lP a +s+++k +l ++  +++ d+ e++ +c +efi +v+sea++ + rek++ti ++ +l al +l fe++v  ++    +++e
  Dusal.0728s00006.1.p  8 EEVLLPKATISKLIKDTLSGRdMRMAGDTTEMIVDCCTEFIQLVSSEANEVSTREKKQTIGPEHVLKALKELDFEEFVGDVQSAWDQFKE 97
                          67799*************875279*******************************************************99988888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.9E-336142IPR009072Histone-fold
SuperFamilySSF471132.1E-288138IPR009072Histone-fold
PfamPF008085.0E-151276IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDGPTDKEEV LLPKATISKL IKDTLSGRDM RMAGDTTEMI VDCCTEFIQL VSSEANEVST  60
REKKQTIGPE HVLKALKELD FEEFVGDVQS AWDQFKEESK VGHANRANLR RTGADREGLT  120
AEQQIELQQQ MFAAARAQTS TSADNAAQMA AAYQQAQMAA LRSNSTGREG SGGPAATPIT  180
PLEPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-25613610133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001691659.17e-52DR1-like protein, partial
TrEMBLA0A150GUQ44e-54A0A150GUQ4_GONPE; Uncharacterized protein
STRINGEDP047673e-51(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP24221515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.27e-32nuclear factor Y, subunit B13