PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dusal.0917s00001.1.p

Organism

Dunaliella salina

Taxonomic ID

3046

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

C3H

Protein Properties

Length: 735aa MW: 76168.1 Da PI: 8.8995

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.0917s00001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.3e-06	123	142	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++ + G+C +G+ C++aHg Dusal.0917s00001.1.p 123 CPDYKQ-GFCMRGELCPYAHG 142 ****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.004	117	144	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.9E-6	117	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-4	123	144	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	149	181	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.925	152	176	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8	152	175	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MYASNSLGGP TPSYLRDPAY GSLKQDMVGA HNAYPLFPLE MEAAMSQERG MALPPFVGTT 60 SETCFTPAEL AHYSTDEFRM FAFKVFRCTK RFAHDWRTCP FAHPTENARR RDPNVYRYSA 120 IACPDYKQGF CMRGELCPYA HGVFECWLHP SRYRTQLCKD GTACSRPLCF FAHSLPELRA 180 PTHTWTPNEE DPQLPQAPTF PEQSSTGNNH PSVAQSPGSP SQSLVQVAAQ LATVSMGREG 240 GDDSKVGPSD LMGLAPGSPT TPGGHIRAHR HKPHHHHHHH HHHHGVQRSG SSNSGAASAL 300 GLTAPRMSNA FARRHGLNPK DNAMLNLQKI AIQQAQLANT GGAATTMAPS GTEVLAARGS 360 NHAHTQLMKG GLGSCASSSR PHHHHHQQRM DRLFSSSSSS SGLDSSSQQQ QQQHTHHGGA 420 GKKGSSTLNH VAAAAANAAV SVPSATPAST STAAAVAAVA AVAGASDGSG ALSSNHSGTS 480 SNHSSSHNSS MHLSNLSADS SGPISGSASG NSNGNSSSPL GLLSTPPAST TAATNSAYLP 540 QRDAASPYLH ASPGGSSSGG KGRRPATAHF MAAGTAPTPP LMHFQAAMNN GSGGSSVAPC 600 GSAAAGNRAG AARTAQSNST GTNSRSGGGH GGMMLPLAWP VMGAGNTASS AHADAATLAA 660 LQQHLEAFSF QPAHSLAGQQ RQQQVAMGPM GMANFAGGTN GGAAMGLLTP QQQQQQSQQQ 720 LLEEYMHSMQ GMQN*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MYASNSLGGP TPSYLRDPAY GSLKQDMVGA HNAYPLFPLE MEAAMSQERG MALPPFVGTT  60
SETCFTPAEL AHYSTDEFRM FAFKVFRCTK RFAHDWRTCP FAHPTENARR RDPNVYRYSA  120
IACPDYKQGF CMRGELCPYA HGVFECWLHP SRYRTQLCKD GTACSRPLCF FAHSLPELRA  180
PTHTWTPNEE DPQLPQAPTF PEQSSTGNNH PSVAQSPGSP SQSLVQVAAQ LATVSMGREG  240
GDDSKVGPSD LMGLAPGSPT TPGGHIRAHR HKPHHHHHHH HHHHGVQRSG SSNSGAASAL  300
GLTAPRMSNA FARRHGLNPK DNAMLNLQKI AIQQAQLANT GGAATTMAPS GTEVLAARGS  360
NHAHTQLMKG GLGSCASSSR PHHHHHQQRM DRLFSSSSSS SGLDSSSQQQ QQQHTHHGGA  420
GKKGSSTLNH VAAAAANAAV SVPSATPAST STAAAVAAVA AVAGASDGSG ALSSNHSGTS  480
SNHSSSHNSS MHLSNLSADS SGPISGSASG NSNGNSSSPL GLLSTPPAST TAATNSAYLP  540
QRDAASPYLH ASPGGSSSGG KGRRPATAHF MAAGTAPTPP LMHFQAAMNN GSGGSSVAPC  600
GSAAAGNRAG AARTAQSNST GTNSRSGGGH GGMMLPLAWP VMGAGNTASS AHADAATLAA  660
LQQHLEAFSF QPAHSLAGQQ RQQQVAMGPM GMANFAGGTN GGAAMGLLTP QQQQQQSQQQ  720
LLEEYMHSMQ GMQN*

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	8e-48	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Dusal.0917s00001.1.p