PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.1055s00002.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 525aa    MW: 55888.8 Da    PI: 7.0013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.1055s00002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.46.5e-10223244526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C f++rtGtC y drCkF+H+
  Dusal.1055s00002.1.p 223 VCTFYMRTGTCAYKDRCKFHHP 244
                           7********************9 PP
2zf-CCCH23.31.1e-07264287427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           + C ++ + G+C +G +Ck++H++
  Dusal.1055s00002.1.p 264 SDCVHYTKKGWCAFGVTCKYNHPE 287
                           68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.239218246IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6219245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6221246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5222243IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7222244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.638260288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5261287IPR000571Zinc finger, CCCH-type
SMARTSM003560.39262287IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5264287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MPEDDPCSQD QQRHPDPHGD AHKPEQVAEG HSPPFMIGNQ GVNDHFFEML RRDAPFPQQQ  60
VLFNFNLPAR VTRTHSCDGV GTGLGGAAAS HRSDNDELHA RSTFGIRKPM GSQAESKSGD  120
HAAAVATPTH QSLGKDLSLA AQLHSRQIGS AGAHGESHRR SSDPFLSHGP FSSNLSSLRE  180
GSSSNESNSL KTRAISDNSL PPKAQPKAPE PAAPIDPGTG KQVCTFYMRT GTCAYKDRCK  240
FHHPLNCPPP ILNSHGYPLR AEESDCVHYT KKGWCAFGVT CKYNHPEGIA ASPLAPALTT  300
LGAPPHMAVT PVPAGMPSPM VLGLAHQPQL LLPQQQQQLQ SMVIQQQQLQ EPALWSSLPP  360
QQHMVAAQQQ QQQQQQALYW AVASDPDSSF NQQQLPQPQP LMTQVPAMQP SAYMPAMQPV  420
ALPQQQQASA AGQLVYAPAG MLTLPGGIAG GQGMPVLSQG MPVLSQGLLA LSEPTTWGAA  480
GGGGRPVGSI QTASIEQAMA QLRLPSQMQQ PDAGYAPEGG GRWM*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP623277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.37e-17C3H family protein