PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dusal.1327s00001.1.p

Organism

Dunaliella salina

Taxonomic ID

3046

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

C3H

Protein Properties

Length: 577aa MW: 57131.3 Da PI: 10.8057

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.1327s00001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.5e-07	519	541	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++ +C+ff++ G C G C+F+H Dusal.1327s00001.1.p 519 GRIPCKFFQE-GRCAKGLACTFSH 541 6789****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0013	517	543	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.037	517	544	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-4	519	541	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	520	542	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-4	522	543	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MHTGVVALSH MDPKLLATIL HTAFASGVEL DERSRAGNVF HPATLFASRQ TVSAAKQSLA 60 EQRGASLPSP SAPESQDASS ATAPPATATA APSVLPAGTA AHAASGAPSL PATPTESAAL 120 LPQTNVPQSR GSSYGNDTSI GASGSEGLVS SPRRGTATPS QAATKQPALP LRAPWVPSQL 180 QVPNDQAQDK ADTAWTLLLH AYKGPDGKNQ AAPQIATRLV GLQNSVLGML AARHDATVVV 240 ALPVDIAGLP VPPADAVCRM LQPIGSGDGL KVSAAQYCKA AARRANAQNL VDKLLGLTSF 300 GTSRGAGGGG AGAGGRFSRD SRASMTPGGR GFGGRSFASS SVYNNNSMNS TGRGSGGSIY 360 NKSMHSAGRG SGGQSSARSY NGIGSHGFGN PGAGSPSATT DSNTRGGSSR PHSSGFSAAS 420 SQPPPTLGIT TSFGQTGISP YGPKAGITST FGQAGISPYG SSPSPKSSPC GTIGSRPPPP 480 PPPASYGGGA FLAPPHPPPV PNSPSVASAP STTTSGRPGR IPCKFFQEGR CAKGLACTFS 540 HEASTSAAPG GVGVAAFGRG GRGRGFSGNS RGGYQG*

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MHTGVVALSH MDPKLLATIL HTAFASGVEL DERSRAGNVF HPATLFASRQ TVSAAKQSLA  60
EQRGASLPSP SAPESQDASS ATAPPATATA APSVLPAGTA AHAASGAPSL PATPTESAAL  120
LPQTNVPQSR GSSYGNDTSI GASGSEGLVS SPRRGTATPS QAATKQPALP LRAPWVPSQL  180
QVPNDQAQDK ADTAWTLLLH AYKGPDGKNQ AAPQIATRLV GLQNSVLGML AARHDATVVV  240
ALPVDIAGLP VPPADAVCRM LQPIGSGDGL KVSAAQYCKA AARRANAQNL VDKLLGLTSF  300
GTSRGAGGGG AGAGGRFSRD SRASMTPGGR GFGGRSFASS SVYNNNSMNS TGRGSGGSIY  360
NKSMHSAGRG SGGQSSARSY NGIGSHGFGN PGAGSPSATT DSNTRGGSSR PHSSGFSAAS  420
SQPPPTLGIT TSFGQTGISP YGPKAGITST FGQAGISPYG SSPSPKSSPC GTIGSRPPPP  480
PPPASYGGGA FLAPPHPPPV PNSPSVASAP STTTSGRPGR IPCKFFQEGR CAKGLACTFS  540
HEASTSAAPG GVGVAAFGRG GRGRGFSGNS RGGYQG*

Link Out ? help Back to Top
Phytozome	Dusal.1327s00001.1.p