PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.2241s00001.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 86aa    MW: 9725.27 Da    PI: 9.0801
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.2241s00001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-11632127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          +++  C+ff++tG+C++Gd+C + H++
  Dusal.2241s00001.1.p  6 PGRTACDFFLKTGHCRFGDTCVYDHPE 32
                          57899********************96 PP
2zf-CCCH26.51.1e-084873227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           ++ C ++++  +CkyG+ Ck +H+p
  Dusal.2241s00001.1.p 48 EQPVCAYYLKHAECKYGPACKWHHPP 73
                          5799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.737533IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-6532IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-7733IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-51133IPR000571Zinc finger, CCCH-type
SMARTSM003560.154673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.694674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-54672IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-64973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-45172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
TYPRRPGRTA CDFFLKTGHC RFGDTCVYDH PEHAAVRLTQ MGLPLRPEQP VCAYYLKHAE  60
CKYGPACKWH HPPLRPVFAG SLLRS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002958109.11e-36hypothetical protein VOLCADRAFT_107956
SwissprotQ5JLB52e-20C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLD8UHE62e-35D8UHE6_VOLCA; Uncharacterized protein
STRINGXP_002958109.14e-36(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1372922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-20zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]