PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT00181

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Protein Properties

Length: 230aa MW: 26670.6 Da PI: 10.3123

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT00181	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.3	1.8e-10	144	228	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +t+s+++ + +l++p +f +++ + + ++ l de+ ++ + + + g+ +++GW+ F+ ++L +gD +vF+ ++r++f+ v EMT00181 144 FIKPMTRSYATGH-LLTIPQQFKKSYL--PWFDEMIFLVDEEDGEFPMPY--MAQHGA--IGSGWNLFAIGHKLADGDCLVFQQVQRTKFK--V 228 8899977777765.7*****99993..345568***********..666655..9********************77777774..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-13	139	229	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-16	140	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.58E-13	142	230	No hit	No description
PROSITE profile	PS50863	9.037	143	230	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0055	144	229	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.3E-8	144	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDEPNSYEEQ RRRQVEENER KLEELRLHRL SAAVREAAVK PMPVSSTPPS SQKRRFAVRF 60 LPPSDLLVPQ TKELKLRYLR APPPPTRRSG RVASLPKQPD YRDKKAPRRG LPPDRVYATD 120 EARDYAFTKA KELNNQLFSA HPSFIKPMTR SYATGHLLTI PQQFKKSYLP WFDEMIFLVD 180 EEDGEFPMPY MAQHGAIGSG WNLFAIGHKL ADGDCLVFQQ VQRTKFKVRF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374346	8e-43	AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175456.1	1e-143	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	2e-67	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	N1QTK5	1e-168	N1QTK5_AEGTA; B3 domain-containing protein
STRING	EMT00181	1e-169	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-31	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]