PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01310
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 219aa    MW: 24188.6 Da    PI: 10.6089
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01310genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.24.9e-121301572956
               HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  29 ereeLAkklgLterqVkvWFqNrRakek 56 
               e+++LA +lgL+ rqV vWFqNrRa+ k
  EMT01310 130 EKRDLAGQLGLKPRQVEVWFQNRRARTK 157
               7889**********************98 PP
2HD-ZIP_I/II92.54.6e-3089191189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeper..............KvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                  +kk+rl++eq++lLE+sF++++ L++ r              K +la +Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e 
     EMT01310  89 RKKLRLTAEQAALLEKSFRAHNVLSHVRpclllnlslkckveKRDLAGQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRSEL 186
                  69*******************998764333333333333333899****************************************************9 PP

  HD-ZIP_I/II  85 eeLre 89 
                  +e r+
     EMT01310 187 AETRA 191
                  98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1372160IPR009057Homeodomain-like
PROSITE profilePS5007114.0985159IPR001356Homeobox domain
SMARTSM003891.4E-987163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1489162IPR009057Homeodomain-like
CDDcd000863.29E-1089160No hitNo description
PfamPF000463.9E-1089157IPR001356Homeobox domain
PRINTSPR000315.3E-6130139IPR000047Helix-turn-helix motif
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PRINTSPR000315.3E-6139155IPR000047Helix-turn-helix motif
SMARTSM003405.9E-11159203IPR003106Leucine zipper, homeobox-associated
PfamPF021834.9E-7159190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSSLTTISSA SKESLEVEEL VDTRLSLVIG TGSQPPPVQA PLLRPEARER GEKRIGSSAR  60
QHGKRARAVH SGSDVDDDDN GGDAAGRARK KLRLTAEQAA LLEKSFRAHN VLSHVRPCLL  120
LNLSLKCKVE KRDLAGQLGL KPRQVEVWFQ NRRARTKLKQ TELDCELLRR WCERLSDDNA  180
RLRSELAETR AVLLVGGSHD SRLMGCPSCN RLAGGRRAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692RARKKLR
2151159RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189367.11e-125putative homeobox-leucine zipper protein HOX26
TrEMBLN1QSN61e-154N1QSN6_AEGTA; Putative homeobox-leucine zipper protein HOX26
STRINGEMT013101e-155(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.18e-33HD-ZIP family protein