PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT01348

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 225aa MW: 25547.1 Da PI: 6.6815

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT01348	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ EMT01348 70 RGNFSEEEERLIITLHAGLGNK-WSTIATHLD-GRTDNEIKNYWNTH 114 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.52E-5	6	36	IPR009057	Homeodomain-like
PROSITE profile	PS50090	5.622	10	61	IPR017877	Myb-like domain
SMART	SM00717	15	14	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-8	16	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.99E-16	57	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.779	65	119	IPR017930	Myb domain
SMART	SM00717	5.9E-15	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	70	114	IPR001005	SANT/Myb domain
CDD	cd00167	1.34E-10	72	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-24	72	119	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKTLVEHI QKRGGNVGSR RGPPHTGRVY RRGEDRPLRW 60 TNSPRSDIKR GNFSEEEERL IITLHAGLGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPDQTNHD TERERQYAAF ARFEARRRGR HEGGIVVLED SDDDDDAPPP 180 PVRHGDVGEG SSRGGRTIKK EKADDSEEDD GDVGDWARLI EFFAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-21	13	119	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169251.1	8e-85	myb-related protein Zm38-like
Refseq	XP_020179028.1	8e-85	myb-related protein Zm38-like
Swissprot	Q9S9Z2	3e-49	MYB93_ARATH; Transcription factor MYB93
TrEMBL	R7VZI6	1e-164	R7VZI6_AEGTA; Transcription factor MYB39
STRING	EMT01348	1e-165	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6265	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	6e-53	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]