PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01440
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family CPP
Protein Properties Length: 283aa    MW: 31970.9 Da    PI: 8.0246
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01440genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.2e-141249340
       TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
              +k+C Ckks+Clk+YC Cfa g +Cse+C C  C+Nk 
  EMT01440 12 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCVPCFNKA 49
              89**********************************97 PP
2TCR506e-1673109339
       TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
               ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  EMT01440  73 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 109
               589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-141051IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.52711111IPR005172CRC domain
PfamPF036383.1E-101348IPR005172CRC domain
SMARTSM011146.5E-1571112IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-1174108IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRQKVEDAAD GCKHCACKKS RCLKLYCPCF AGGGYCSEKC GCVPCFNKAD FAETVQTTRK  60
EDAHNSSSST PPRRGCNCKK SSCLKKYCDC YQDGTGCSLF CRCEDCKNPY GKNEGFMADE  120
SKRFIYTGAD LDHSEDEHDF IVERSPRLQS PISKESSFQH TPPRSKASSR DTHLLPQVLS  180
QWQPRSWQQS SKRQGNDHRA IDDSGDNHKS SSHEWQLAKH QVQEDAYSIS RCVQILNGMV  240
ELSQVEKSVA PDVFLQPGNR EIFVSLGLDV RALWLKRKIQ HLT
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678660.0AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBankAK3745570.0AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157750.10.0protein tesmin/TSO1-like CXC 3
SwissprotQ8L5481e-34TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBLN1QSR00.0N1QSR0_AEGTA; Uncharacterized protein
STRINGEMT014400.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-37Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]