PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT01573

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

LBD

Protein Properties

Length: 181aa MW: 19979.3 Da PI: 5.0304

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT01573	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.9	4.1e-39	23	123	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +CaaCk+lrr+Ca+dCvlapyfpa++p+++a vh++FGasnv +ll++lp +er +a++++++eA++r++dPvyG++gvi++lq+++ ++ ela+++++l EMT01573 23 RCAACKYLRRRCAHDCVLAPYFPASHPHRYASVHRVFGASNVARLLQSLPVDERAQAAETMAMEAQWRVEDPVYGCTGVISQLQEEILATQCELARTQAQL 123 6***********************************************************************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.698	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-39	23	120	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:3.40.50.2020	0.001	25	75	IPR029057	Phosphoribosyltransferase-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSTTGDVEMQ EEDQEGGGNN PKRCAACKYL RRRCAHDCVL APYFPASHPH RYASVHRVFG 60 ASNVARLLQS LPVDERAQAA ETMAMEAQWR VEDPVYGCTG VISQLQEEIL ATQCELARTQ 120 AQLAIVHAHG AQLQDSTVAF PPPQPQPRRI DGHHVPVAQR QGQEEAAPLL DPDEFLDLDG 180 F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-32	24	123	12	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-32	24	123	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171546.1	1e-126	LOB domain-containing protein 24-like
Swissprot	P59468	2e-45	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	R7VZQ0	1e-131	R7VZQ0_AEGTA; Uncharacterized protein
STRING	EMT01573	1e-132	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	8e-42	LOB domain-containing protein 24