PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01729
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family Trihelix
Protein Properties Length: 358aa    MW: 39838.1 Da    PI: 8.0947
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01729genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.29.2e-231691787
  trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
              m++++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  EMT01729  1 MDTTFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFQELEA 69
              7899**************************************************866665..******985 PP
2trihelix111.36e-35108193187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  EMT01729 108 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 193
               8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.56E-18149No hitNo description
PfamPF138371.8E-16370No hitNo description
PROSITE profilePS500904.9251542IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-4107164IPR009057Homeodomain-like
PROSITE profilePS500907.062107165IPR017877Myb-like domain
PfamPF138371.2E-22107194No hitNo description
CDDcd122031.17E-27108172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDTTFRDATL KGPLWEEVSR KLAELGYKRS AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS  60
YRFFQELEAL HAATAAAQQQ QPDHLPLHVV EAAGLGGGES GGGPSSSRWP KTEVHALIQL  120
RMDMDNRYQE NGPKGPLWEE ISAGMRRLGY SRNSKRCKEK WENINKYFKK VKESNKRRPE  180
DSKTCPYFHQ LEAIYRKKHN GGGSSGAAAN NAVVSVPAVA EHQNLNRHEI EIEGKKINDT  240
DKRNNGGVGA AQVPTSNGQT TPTMATFDLG VKKPEDAVRE LNEQPHREFT TDETDSDDMG  300
DDYTDDGEDG EDDGKMQYRI QFQRPNPVGT NNAPPPPTTA ATAAPTSTPA SSFLAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589110.0AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200393.11e-147trihelix transcription factor GTL1-like isoform X1
SwissprotQ391176e-49TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLN1QPM80.0N1QPM8_AEGTA; Uncharacterized protein
STRINGEMT017290.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-50Trihelix family protein