PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02428
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 205aa    MW: 21941.8 Da    PI: 8.9672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000746183123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg+ F +   L  H  +H
  EMT02428 61 FVCKTCGRAFETFQALGGHRTSH 83
              89*********999998888777 PP
2zf-C2H2157.1e-05111133123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C++Cg  F +   L  H+r+H
  EMT02428 111 HDCHICGLGFETAQALGGHMRRH 133
               56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.426183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4926188IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-761133No hitNo description
PfamPF139128.5E-106185IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014111138IPR007087Zinc finger, C2H2
SMARTSM003550.049111133IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-8111136IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGAGMKRARE EAPFVSLALS LSTDSSTSTT TSADSASAPA AAAGKRTRRG RAVATSGEGE  60
FVCKTCGRAF ETFQALGGHR TSHLRGRHGL ELGVGVARAI KERKRQEDKQ HDCHICGLGF  120
ETAQALGGHM RRHREEMEEM ALSGADLSDS VFYVLFAYFD ESMSSIGGFQ VLGKDSMDYG  180
IRSGKILSLG MPKAPQVNIQ GQPRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696831e-102AK369683.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095K21.
GenBankAK3721981e-102AK372198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P16.
GenBankEU8125631e-102EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198413.15e-99zinc finger protein 555-like
TrEMBLN1QQ411e-147N1QQ41_AEGTA; Uncharacterized protein
STRINGEMT024281e-148(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.18e-14C2H2 family protein