PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02561
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 313aa    MW: 35868.2 Da    PI: 6.9697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02561genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09230261336
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                       WT eE+  l++a++ +G++ W+ Ia+ ++ +R 
         EMT02561 230 DWTIEEEHALINAHQVYGNR-WAEIAKVLP-RRN 261
                      6*******************.*********.775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.230.106.8E-11114179IPR016143Citrate synthase-like, small alpha subdomain
PfamPF002851.2E-6135179IPR002020Citrate synthase
SuperFamilySSF482561.83E-9142179IPR002020Citrate synthase
PROSITE patternPS004800147159IPR019810Citrate synthase active site
PROSITE profilePS5129410.916223275IPR017930Myb domain
SuperFamilySSF466892.11E-8226262IPR009057Homeodomain-like
SMARTSM007170.0032227273IPR001005SANT/Myb domain
PfamPF002494.9E-8230261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-10230261IPR009057Homeodomain-like
CDDcd001676.47E-6231263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006099Biological Processtricarboxylic acid cycle
GO:0003677Molecular FunctionDNA binding
GO:0046912Molecular Functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNDYVSCSCI LCSPSGFECG LRRRGEASKV VVIREKVAEL YESEQQWLRA AQMLSGIDLD  60
SGIRLKQAFV SVYMSLDFLS LGNLTIFLKT RMLDDTNKLS KCVQIARLYL EDDDDVVNAE  120
AFINKASFLV TNSNREILNL QYKVVPGYGH GVLRNTDPRY SCQREFTLKY LLEDPLFQLP  180
CGSGHDAKDT DGLGLHTMQM CCIHNYLLAP DICAQNAVWT NKMVSLQEDD WTIEEEHALI  240
NAHQVYGNRW AEIAKVLPRR NRVLLFVLRF FSPIAKVKDD KPSGLLKLQD AHNHRLNPRF  300
LDNFDHKLIP KYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5uzp_A3e-12143179336372Citrate synthase, mitochondrial
5uzp_B3e-12143179336372Citrate synthase, mitochondrial
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-129HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLN1QQ690.0N1QQ69_AEGTA; COP9 signalosome complex subunit 4
STRINGEMT025610.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.29e-09myb domain protein 3r-5