PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02670
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 320aa    MW: 36278.5 Da    PI: 4.8535
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02670genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.9e-35121032102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++ ++sw++++nsfvv+d++ fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++ik
      EMT02670  12 FLAKTYDMVDDPATDAVVSWTATSNSFVVWDPHLFATLLLPSYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLRNIK 99 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      EMT02670 100 RRKP 103
                   **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-388101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-608101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDGLGDAGPT PFLAKTYDMV DDPATDAVVS WTATSNSFVV WDPHLFATLL LPSYFKHSNF  60
SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QRHLLRNIKR RKPTHGSQNQ QSLGSYLEVG  120
NFGHDVEIDH LKRDKQLLMA EVVKLRQEQQ NTRSDLQAME KRLQGTEQKQ QQMMSFLARV  180
MQNPMFIRQL ISQSEMRKEL EDAISNKRRR RIDQGPEVVD SMGTGSTLEQ GSQVMFEQQE  240
PVDSLVNGVI SDLESSSVDT KGAEVQQSVA SSRSEQLRGR PSGELNDDFW EDLLHEGGLG  300
EEASNLVVPD DMNLLAEKLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-27310117129Heat shock factor protein 1
5d5v_B8e-27310117129Heat shock factor protein 1
5d5v_D8e-27310117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581480.0AK358148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187328.10.0heat stress transcription factor A-2e-like
SwissprotQ6F3881e-177HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A453M2620.0A0A453M262_AEGTS; Uncharacterized protein
TrEMBLR7W0Z10.0R7W0Z1_AEGTA; Heat stress transcription factor A-2e
STRINGEMT026700.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-97heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]