PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02801
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 124aa    MW: 14399.8 Da    PI: 10.4695
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02801genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.7e-161350542
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              n+s r  tf kR  g++KKA+EL +LCd++++v+++ +
  EMT02801 13 NDSTRRGTFKKRHRGLMKKASELAILCDVRACVLVYDE 50
              899999*****************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.072161IPR002100Transcription factor, MADS-box
CDDcd002661.81E-24285No hitNo description
SuperFamilySSF554558.89E-22395IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-151351IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MARKKVTLQY TPNDSTRRGT FKKRHRGLMK KASELAILCD VRACVLVYDE GEMVPEVFPS  60
HVGAVKILNI FKNMPELEQY KKMMNQEGFL RERIDKLRDQ LRKFGREAGT TRDPPAQGHV  120
WQPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-145HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199157.11e-89agamous-like MADS-box protein AGL80
TrEMBLR7W5Q23e-88R7W5Q2_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT028015e-89(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-27AGAMOUS-like 80