PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT03062

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

G2-like

Protein Properties

Length: 214aa MW: 23289.9 Da PI: 10.3722

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT03062	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.8	1.4e-29	20	72	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 pr++Wt eLH++F++a+e LGG+++AtPk +l++m+vk Lt++hvkSHLQ+YR EMT03062 20 PRMQWTAELHRSFLQAIECLGGEHNATPKLVLKVMGVKELTISHVKSHLQMYR 72 9**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-27	16	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-23	20	72	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-7	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGSSAKKQEA VRRYVRSRAP RMQWTAELHR SFLQAIECLG GEHNATPKLV LKVMGVKELT 60 ISHVKSHLQM YRGPSTRKAK REAQPGLQRR HSCAADEQGG APFMCPPLKR ARTGAGTEAA 120 GEGMQGGQSQ GISGMKTSGA VNRYCIDDYY MQAMAMERRI MEGLSGWQRE GGAAGGGCRA 180 RNGGPQRLAE GCCCCGCCFR PPDRGMLGAR IRRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-16	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185290.1	1e-119	putative Myb family transcription factor At1g14600
TrEMBL	R7W4M6	1e-154	R7W4M6_AEGTA; Putative Myb family transcription factor
STRING	EMT03062	1e-155	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	9e-28	G2-like family protein