PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03085
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 235aa    MW: 26943.9 Da    PI: 9.5313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03085genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++  g+W++++r  g+++++k+c++rw +yl
         EMT03085 16 KGLWSPEEDEKLYNHIIRHVVGCWSSVPRLAGLNLCGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding45.51.8e-1469112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w  
         EMT03085  69 RGCFLQQEEDHIVALHHILGNR-WSQIASHLP-GRTDNEIKNFWKL 112
                      678889****************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-181165IPR009057Homeodomain-like
PROSITE profilePS5129414.6261163IPR017930Myb domain
SuperFamilySSF466896.84E-2513110IPR009057Homeodomain-like
SMARTSM007171.2E-91565IPR001005SANT/Myb domain
PfamPF002494.0E-121663IPR001005SANT/Myb domain
CDDcd001672.23E-71963No hitNo description
PROSITE profilePS5129421.99364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2266118IPR009057Homeodomain-like
SMARTSM007172.0E-1268116IPR001005SANT/Myb domain
PfamPF002491.6E-1269112IPR001005SANT/Myb domain
CDDcd001673.01E-874113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRPSSGGAG QPKLRKGLWS PEEDEKLYNH IIRHVVGCWS SVPRLAGLNL CGKSCRLRWI  60
NYLRPDLKRG CFLQQEEDHI VALHHILGNR WSQIASHLPG RTDNEIKNFW KLHQKKKLRQ  120
QSIDPATHKP MGATATAALP DAEEEDLLRW KGGRGLRRRR VLRRGRQLRV GRPGEPGLRG  180
ELQMLDGEVG SVLDGEVLHW AKAELAFADM EYEFSLPCQE QSLLPNFEFN MEHYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21101181108B-MYB
1h8a_C5e-211211823128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643781e-170AK364378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2024H18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180810.12e-95myb-related protein Hv33
SwissprotP200275e-82MYB3_HORVU; Myb-related protein Hv33
TrEMBLN1QQJ81e-173N1QQJ8_AEGTA; Myb-related protein Hv33
STRINGEMT030851e-173(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-62myb domain protein 86