PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03170
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 288aa    MW: 30339.9 Da    PI: 10.0545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03170genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09911311055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  EMT03170  91 RLRRERIAERMKALQELVPSA-----NKTDKASMLDEIIDYVKFLQ 131
               88******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.22781130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-1385141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-1087136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-1091135No hitNo description
Gene3DG3DSA:4.10.280.107.8E-1391140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-791131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MARLLPLAGL LLPPPFIYVG GGHPKGTPKF LLAMCGAPST ETHLGHIVVV LRQSLALIAE  60
IPCVRYLIDW IAKTFDYINR VTKRFRFRST RLRRERIAER MKALQELVPS ANKTDKASML  120
DEIIDYVKFL QLQVKVLSMS RLGGAAAVGP LVAGLSSEIT KRIWNVSLLT IGPSSGNGNG  180
TSSSGDGNGD DDNGGSTLRA TEQQVARLME EDMGTAMQYL QGKGLCLMPI SLASVISSAT  240
SSSLRSATRP AGNAGGPLHE GGSPASPRLV NGGVGADGSR TIGDGGGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742251e-158AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170436.15e-93transcription factor bHLH82-like
SwissprotQ9LSQ32e-59BH082_ARATH; Transcription factor bHLH82
TrEMBLR7W1I40.0R7W1I4_AEGTA; Transcription factor bHLH82
STRINGEMT031700.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-36LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]