PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03764
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 222aa    MW: 24513.7 Da    PI: 10.236
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03764genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1997152156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rrk+ ++tkeq   Le  F+ ++ +s+ +++eLA++l+L+ rqV vWFqNrRa+ k
  EMT03764  97 RRKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTK 152
               79999*************************************************98 PP
2HD-ZIP_I/II1131.9e-3698186189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq +lLE sF++++ L++ +K+elar+L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++e+++L++e  eLr+
     EMT03764  98 RKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTKLKQTEVDCEFLKRWCESLTHETQQLKHELLELRR 186
                  69************************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-2073155IPR009057Homeodomain-like
SuperFamilySSF466892.3E-2077155IPR009057Homeodomain-like
PROSITE profilePS5007117.83194154IPR001356Homeobox domain
SMARTSM003892.9E-1596158IPR001356Homeobox domain
CDDcd000863.58E-1497155No hitNo description
PfamPF000461.3E-1697152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
SMARTSM003409.2E-14154197IPR003106Leucine zipper, homeobox-associated
PfamPF021832.1E-8154185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MERRDLGAWL GLATGGGAAW HTHDGERRPD PVRLDELFPQ RGKEERDHGE QVARNTGGKG  60
ARRKIKVGGD DEGRSSSSNG PCLSDGGGSD GGGGGGRRKK LRLTKEQCAL LEGSFRAHNI  120
LSHVQKQELA RQLNLSSRQV EVWFQNRRAR TKLKQTEVDC EFLKRWCESL THETQQLKHE  180
LLELRRSAVA PVAAGSKLFA QLPRAAAMMN LCPSCEKVAV NN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102GRRKKLRL
2146154RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180166.11e-161homeobox-leucine zipper protein HOX18-like
RefseqXP_020181275.11e-161homeobox-leucine zipper protein HOX18-like
SwissprotQ5Z6F61e-60HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLM8AQV61e-160M8AQV6_AEGTA; Homeobox-leucine zipper protein HOX18
STRINGEMT037641e-161(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-41homeobox from Arabidopsis thaliana