PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT03825

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

LBD

Protein Properties

Length: 265aa MW: 29350.1 Da PI: 4.0796

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT03825	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	31.1	6.4e-10	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m++l+y+Ae+ra dPv G++++i +l++ e l+aela+l+++ EMT03825 1 MQTLIYQAEMRAMDPVGGCCRMIIDLEHTSELLSAELAALQQH 43 89*************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.8E-7	1	41	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	8.626	1	44	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MQTLIYQAEM RAMDPVGGCC RMIIDLEHTS ELLSAELAAL QQHLDMCRQA ASGVAGGDVM 60 DGPCADLEVT SSNHQQEQLL LHADQDHQVV DAIYVAQEGA DPVIQNGADH DDSRQPQYHG 120 GQQQQQQQQL YDYFYYEATG AGSDEAGRKP SGSGVDINVD VMQHFDYDSS CEVDDHHKVD 180 QLEPMISSSL EEHYQIGQKE YEMKVASFVD VLDVRPELQA VDGNADIGIK EELQEEDPKN 240 NDEDIALRKA AHMAESSHCR LGLGF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151955.1	0.0	uncharacterized protein LOC109737153
TrEMBL	A0A3B6H6F3	0.0	A0A3B6H6F3_WHEAT; Uncharacterized protein
STRING	EMT03825	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61