PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04093
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRF
Protein Properties Length: 202aa    MW: 22206.3 Da    PI: 10.5964
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04093genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.43.4e-2593136144
       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
               d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  EMT04093  93 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 136
               79***************************************998 PP
2QLQ64.13.5e-222156237
       QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
              +FTa+Q+q+L++Q+l+yKy+a+++P+P++Ll+++++
  EMT04093 21 PFTATQWQELEHQALIYKYMASGVPIPSDLLLPLRR 56
              9********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-112056IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.8E-162154IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4252156IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.57393137IPR014977WRC domain
PfamPF088797.7E-2194136IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MMMMGGRAGA GGVGAGGGRC PFTATQWQEL EHQALIYKYM ASGVPIPSDL LLPLRRSFLL  60
DSALAPSPSL AFPPQAALGW GCFGMGFGRK AEDPEPGRCR RTDGKKWRCS KEAYPDSKYC  120
EKHMHRGKNR SRKPVEMSLA TPPPPPSSSA SSSSSNVNDP KSQREDRERS CNERPSPRRT  180
RTCRGYRGFK SKGDRQIKGQ LS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3538130.0AK353813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156076.11e-110growth-regulating factor 1-like isoform X1
SwissprotQ6AWY87e-79GRF1_ORYSJ; Growth-regulating factor 1
TrEMBLM8BBH21e-145M8BBH2_AEGTA; Uncharacterized protein
STRINGEMT040931e-146(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57413652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-43growth-regulating factor 5