PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT04109

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 152aa MW: 16489.1 Da PI: 8.1428

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT04109	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	97.4	2.1e-30	1	102	120	232
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220 +qGlQWp L++ LasRp+gpp++R+Tg+g+ s ++le+tg+rL++fA++lg+pfef + va++ +l++e+L v ++Ea+aV++ + h+l+d ++s EMT04109 1 MQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLH--HSLYDVTGSD 94 69**************************....***********************.7***********************9..8899888888 PP GRAS 221 eserdevLklvk 232 ++ +L l+k EMT04109 95 SN----TLCLIK 102 77....666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.656	1	152	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-28	1	102	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMDALEATGK RLSDFADTLG LPFEFCPVAD 60 KAGNLDPEKL GVTRREAVAV HWLHHSLYDV TGSDSNTLCL IKRYCRSTPL YSTSTFVSVC 120 CATPTLRHAA SIVKSTMESC LLSSLHFLTP PM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-57	1	140	138	267	Protein SCARECROW
5b3h_A	1e-57	1	140	137	266	Protein SCARECROW
5b3h_D	1e-57	1	140	137	266	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}.
UniProt	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269\|PubMed:12974810}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359827	1e-151	AK359827.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1103O07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186306.1	1e-67	protein SCARECROW 1-like
Swissprot	A2ZHL0	3e-64	SCR2_ORYSI; Protein SCARECROW 2
Swissprot	Q2QYF3	3e-64	SCR2_ORYSJ; Protein SCARECROW 2
TrEMBL	A0A453KCR5	1e-106	A0A453KCR5_AEGTS; Uncharacterized protein
TrEMBL	M8ARR3	1e-108	M8ARR3_AEGTA; Uncharacterized protein
STRING	EMT04109	1e-108	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1371	38	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	2e-57	GRAS family protein

Publications ? help Back to Top
Kamiya N, et al. Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis. Plant Cell Physiol., 2003. 44(9): p. 875-83 [PMID:14519768] Lim J, et al. Conservation and diversification of SCARECROW in maize. Plant Mol. Biol., 2005. 59(4): p. 619-30 [PMID:16244911] Kaur P, et al. Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates. Funct. Integr. Genomics, 2008. 8(4): p. 375-86 [PMID:18543009] Sazuka T, et al. A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos. Plant J., 2009. 60(2): p. 227-41 [PMID:19682283] Fan T, et al. Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors. PLoS ONE, 2015. 10(5): p. e0125833 [PMID:26023934] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Li S, et al. Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa. Plant Cell, 2016. 28(5): p. 1025-34 [PMID:27081181]