PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04311
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 242aa    MW: 26098.7 Da    PI: 7.8671
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04311genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP76.15.6e-243686151
              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEE CS
       SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhe 51
              +Cq+egC+adls ak+yhrrhkvCe h+ka+ v+++g++qrfCqqCsrf +
  EMT04311 36 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASLVAAAGKQQRFCQQCSRFER 86
              6************************************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-253286IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.93934111IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-243588IPR004333Transcription factor, SBP-box
PfamPF031102.3E-183786IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMSGGRMNAA AGDDFPFAAM QQPPYVGFEH AGMPPRCQAE GCKADLSGAK HYHRRHKVCE  60
YHAKASLVAA AGKQQRFCQQ CSRFERHQVH PPSKKPNPGA ISSSYAADNN NLSATKSTIS  120
SNTSAISCLQ QHDQSKAAAA AARPMTLTLG EPREKDDHQH LSNAMQLHHH HQEQQHFITS  180
LLQQNNNGNG NSNILSCSSV CSSGLPSAGA ANGEVSDQNN NSNHGGGNNN NNNMHLFEVD  240
FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-1537961170squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478860.0KF447886.1 Triticum aestivum squamosa promoter-binding-like protein 22 (SPL22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180500.11e-101squamosa promoter-binding-like protein 10
SwissprotA2YFT97e-52SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE87e-52SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLM8AIN01e-179M8AIN0_AEGTA; Squamosa promoter-binding-like protein 10
STRINGEMT043111e-180(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.25e-27squamosa promoter binding protein-like 8