PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT04507

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 242aa MW: 26082.4 Da PI: 8.3647

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT04507	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	91	114	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C Cg k+Fs +L++H + + EMT04507 91 HVCRRCGvKRFSVLADLRTHEKHC 114 79******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MASLSWRKAV PQGPGEEPIT DRRGHGDQYK APGALARPGS PAPGAGTGRR FFYSCPYAGC 60 KRNREHRDFQ PLKTPVCVKN HYRRSHCDKS HVCRRCGVKR FSVLADLRTH EKHCGRDRWV 120 CSCGVSFSRK DKLFAHVAIF DGGHTPALPP SDDEAIGHCT AATAIDSILV PSSGQPLPVS 180 GGEAVNVVDQ SFSGQMLDGL SFSGAKGGMD DGRAKLSSPI GIDFCDFDGF DLLGAVAMDF 240 NF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366708	0.0	AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188988.1	1e-160	zinc finger protein STAR3-like
Swissprot	Q943I6	4e-61	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	M8BND2	1e-177	M8BND2_AEGTA; Uncharacterized protein
STRING	EMT04507	1e-178	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-58	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]