PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT04724

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

M-type_MADS

Protein Properties

Length: 179aa MW: 20552.7 Da PI: 10.6072

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT04724	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.2	1.2e-24	89	138	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+EL LCdaeva+++fs+ g+lyey+s EMT04724 89 RIEDRTSRQVRFSKRRSGLFKKAFELGLLCDAEVALLVFSPAGRLYEYAS 138 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.259	80	140	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.3E-30	80	139	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.78E-31	81	139	No hit	No description
PRINTS	PR00404	3.3E-26	82	102	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-24	82	143	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-24	89	136	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-26	102	117	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-26	117	138	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MPFRHWKDYS DNDKTSAAAQ TKKEGLTQIF AAWWFVNVME GPVPSLSLIF ARSPLHPIIE 60 RRTPASERQP EEEEARRGMA RRGPVELRRI EDRTSRQVRF SKRRSGLFKK AFELGLLCDA 120 EVALLVFSPA GRLYEYASSR EKMKLIAKGD AETAVGIMRS RKEKDPKFFL SMCVTRKGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
1tqe_R	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
1tqe_S	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
6c9l_A	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
6c9l_B	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
6c9l_C	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
6c9l_D	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
6c9l_E	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
6c9l_F	2e-16	82	139	3	60	Myocyte-specific enhancer factor 2B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370352	2e-80	AK370352.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109D12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149861.1	2e-66	MADS-box transcription factor 51-like
Refseq	XP_020149862.1	2e-66	MADS-box transcription factor 51-like
TrEMBL	M8ATH1	1e-128	M8ATH1_AEGTA; Uncharacterized protein
STRING	EMT04724	1e-129	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	3e-23	AGAMOUS-like 14