PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04827
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 1251aa    MW: 140144 Da    PI: 8.0146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04827genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.8e-167157961094
               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               v+ +++ v+p+kf++++gg+   s+t+ le+++g  ++v++  +k  +++vl+ +GW+ Fv+a+g++e+D+++F+++++s+fe +v
  EMT04827 715 VMDNCLQVIPNKFIDHFGGN--ISRTIELESRNGSMYTVEV--SKLMNETVLRrRGWQAFVDAHGVEENDSLLFRHIEKSCFEVLV 796
               5678999*******888999..889****************..888888777659**********************99***5544 PP
2B347.23.9e-159391028895
                -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
        B3    8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95  
                +++++++ +v+pk faeeh   ++es+ ltl+   ++++W   +++rk ++++vlt + W +F ++ng++egD +vF+ + g+ ++ +++v+
  EMT04827  939 KMSTQNRTIVIPKLFAEEHF--PRESQNLTLQRpGKSKKWHPWFSIRKDRCGHVLTgSRWVGFLRDNGVQEGDLCVFQPVqGTgTRSKFTVH 1028
                566777889**********8..457778***995566*******99******9998678*******************66244445555555 PP
3B342.11.6e-13116512451799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS
        B3   17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99  
                +++  +a+++ ++  e + +tl  ++ ++Wev++  r + g+ +l++GW +F+++n+L++ D+++F+ ++++ ++ +++v+++r+
  EMT04827 1165 TISGAYAADY-LPAGERVAVTL-VRRKKVWEVEM--RARNGGRTLAQGWCGFARDNRLRVQDVCLFQpMEKNhESLTMTVHIIRH 1245
                6666777777.23333444554.4689*******..55555567999********************555888*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1360.706.1E-2128127IPR005148Arginyl tRNA synthetase N-terminal domain
SMARTSM010165.0E-1532119IPR005148Arginyl tRNA synthetase N-terminal domain
PfamPF034852.3E-1438119IPR005148Arginyl tRNA synthetase N-terminal domain
SuperFamilySSF551901.44E-1149129IPR005148Arginyl tRNA synthetase N-terminal domain
SuperFamilySSF523745.63E-69200528No hitNo description
PfamPF007501.1E-96201523IPR001278Arginine-tRNA ligase
TIGRFAMsTIGR004561.2E-100201616IPR001278Arginine-tRNA ligase
Gene3DG3DSA:3.40.50.6209.0E-91201528IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PRINTSPR010381.5E-19203219IPR001278Arginine-tRNA ligase
PRINTSPR010381.5E-19227240IPR001278Arginine-tRNA ligase
PRINTSPR010381.5E-19368389IPR001278Arginine-tRNA ligase
SuperFamilySSF473235.75E-24531618IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
Gene3DG3DSA:1.10.730.104.0E-26531617IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
SMARTSM008366.4E-15537622IPR008909DALR anticodon binding
PfamPF057466.3E-21537617IPR008909DALR anticodon binding
CDDcd100173.12E-15695798No hitNo description
SMARTSM010198.5E-10714800IPR003340B3 DNA binding domain
PfamPF023629.0E-14716796IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-17716802IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-17719801IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.068722800IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-189271031IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-169281030IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-179321030No hitNo description
PROSITE profilePS5086311.4489321033IPR003340B3 DNA binding domain
SMARTSM010195.6E-89341033IPR003340B3 DNA binding domain
PfamPF023621.3E-139351029IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-1711391247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1511391246IPR015300DNA-binding pseudobarrel domain
CDDcd100177.48E-1411441244No hitNo description
SMARTSM010190.004311461246IPR003340B3 DNA binding domain
PfamPF023629.5E-1211641245IPR003340B3 DNA binding domain
PROSITE profilePS5086310.10911901246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006420Biological Processarginyl-tRNA aminoacylation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004814Molecular Functionarginine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1251 aa     Download sequence    Send to blast
MGGEAASTSS STPHSQPLET EATQCRVESV KRHLSRLVVK SLCAVAADFD VEPMLEVSKS  60
GFGDYQCNNA MSLFPRIRES ATNLGNPNAV GQAIADNLPP SRIVESTSVV GPGYVNIVLS  120
SDWIAQSCLR LPGVVRGGHG AFSSMPSIMA ALSAIVAHRL FLHTVHLCRA VGRGPVVITL  180
FAMIESPPRP APRRSICSLD EMHVGHIRST IIGDTLARIF EFANIEVLRR NHVGDWGTQF  240
GMLIQFLFEK FPNGEEAANQ AIGDLQSFYR DAKKKFDENP DFKGRAQQAV VRLQRGEDRY  300
LAAWKSICQI SRNEFDLVYK RLNVELEEKG ESFYNPYIPR VLEELTGKGL ITESKGARVI  360
EGRKPPLIVV KRDGGFNYAS TDLAALWYRL NVEMAEWIIY VTDVGQQQHF HSVFSAARMA  420
GWLPDQKEEK YPKASHVGFG FVLGADGSRF RTRSSDGAVR LVDLLDEAKS QSLAQLIKRL  480
TENGQIAKWT DEELDKTSEA IGYGAVKYAD LKNNRLTDYK FSYEQMLSDK GNTAVYLQYA  540
HARICSIIQK SNKDVEELKM TEFITLGHPD ERSLGLHLIQ FAEVVEQVCD DLSPHRLCDY  600
LYTLSERFSQ FYTNCQTCQC LMISREYHDR FLQIPCQPKA ACVHICIGTA ESFSLNHRFL  660
LELLCQVHMA GLASQVKRYC DCYKRYAGHL DRKMRCFRGR MTANFRHGMD WLEFVMDNCL  720
QVIPNKFIDH FGGNISRTIE LESRNGSMYT VEVSKLMNET VLRRRGWQAF VDAHGVEEND  780
SLLFRHIEKS CFEVLVLDSD DCEKVLPSAG IKVASCNAQE SGSVDYIDIS SSSGDDTTRS  840
PGSQRFATCE RGDSSHPRKT AVINDSLPEE DSGEDTDAAE EHSEHKSSFE LDDVRQTPSA  900
GRDYVLSRRG RLSGAQEERV TRLLQDVQAE TPVFVAIMKM STQNRTIVIP KLFAEEHFPR  960
ESQNLTLQRP GKSKKWHPWF SIRKDRCGHV LTGSRWVGFL RDNGVQEGDL CVFQPVQGTG  1020
TRSKFTVHLL HESLGASRST GPKKRVGCTT THGNTRVNSA APERATTAHG HGATTMAKAA  1080
PPTPTTLRVN KQQDDGCNHG RQTQRTRQLP KLAPPYVISS AARLTEEQER EVDRTARAIG  1140
SQVPVYVSVM NRSSVGVDNG IYNVTISGAY AADYLPAGER VAVTLVRRKK VWEVEMRARN  1200
GGRTLAQGWC GFARDNRLRV QDVCLFQPME KNHESLTMTV HIIRHSGKRQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zaj_A1e-1264161515543Arginine--tRNA ligase, cytoplasmic
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188321.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLM8BPD70.0M8BPD7_AEGTA; Arginyl-tRNA synthetase
STRINGEMT048270.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP400422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-10B3 family protein