PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04829
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-X1
Protein Properties Length: 798aa    MW: 87548.8 Da    PI: 8.4376
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04829genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.64.6e-07364383119
  zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
               CG+HkC + CH+GpC++ C+
  EMT04829 364 CGRHKCPERCHRGPCDVtCR 383
               *****************9*7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.934104155IPR001841Zinc finger, RING-type
PROSITE patternPS013590104154IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.008204222IPR000967Zinc finger, NF-X1-type
CDDcd060082.24E-8247295No hitNo description
SMARTSM004380.025257276IPR000967Zinc finger, NF-X1-type
CDDcd060088.31E-8300340No hitNo description
SMARTSM004380.0054310329IPR000967Zinc finger, NF-X1-type
CDDcd060084.15E-8354398No hitNo description
SMARTSM004380.0023364384IPR000967Zinc finger, NF-X1-type
SMARTSM0043897512551IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62564582IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44627648IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MPSSYAAAAA SSSRKPAPFT TATATTRKPA PLPAPAPPPS NPSHVSDSDP SSYSSSGEET  60
DLSACDPATA SVLSTYLSVA GNGADLSKVG IFLNSAARRR SPPCLICLDP IRPSDPVWSC  120
SASCFALLHL PCIQSWAHQS ASAAPAPTWG CPKCRVAYPK SQTPTSYHCF CSKTEDPPAD  180
PWILPHSCGD VCGRRLNSNP DSGCEHTCLL LCHPGPCPPC PAVVPNARCF CGAHREPRRC  240
AHQRYSCKGK CNKRLSCELH RCPVDCHDGP CPPCAVRGNH RCECGETMVE RLCSERVFQC  300
KRECSGMLEC GKHKCERGCH GGKCGECPLR GQRTCPCGKK DYPRLECDVE AATCGSTCEK  360
VLGCGRHKCP ERCHRGPCDV TCRLVIKKSC RCGVLKKEAY IGACSPCPLM KTISCFCGKT  420
YFEVEIGRLL ILLFISLCHG SIPPPNPEFT VKPMKKKMEK HIECTPGTPC PPCQEVVLVP  480
CFGEHLGQER AIPCSKSRQF PCQNLCGNLL HCGNHYCTKD CHVLEIPSDQ RKADTILSLS  540
RKNTLAEPCE RCNLPCQRAR DPPCSHPCPS RCHLSDCLPC KALVKRSCHC GAMTHAFECV  600
YYNNLNAKQQ LKVRSCGGPC HRKLPNCPHL CSEICHPGQC PSVDQCMKKV NVRCACNTLK  660
KEWVCQDVLK EYRRSGRDPK VAKGQFGVGL IACGGDCVKK VNVPAAELHQ RKVQENKNPA  720
AEVTNVPKRR KKRDRGAQEP VQVSMWQQMK RYLVVIIALA GLVVLGLLIW KGVYQISDWM  780
NEMEEQKARE RLLRAGRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188359.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLM8ATT90.0M8ATT9_AEGTA; NF-X1-type zinc finger protein NFXL1
STRINGEMT048290.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors