PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05058
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 220aa    MW: 24154 Da    PI: 4.8128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05058genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-175399148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+eEde l ++v+++G+++W++Ia  ++ gR  k+c++rw ++l
         EMT05058 53 KTPWTQEEDEALRRGVREHGPKSWDAIALALP-GRASKSCRLRWCQHL 99
                     579*****************************.***********9986 PP
2Myb_DNA-binding46.96.3e-15107149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++  +++G++ W+tIar++  gR+++ +k+rw++ 
         EMT05058 107 PFTPEEDEEIIRRQHEFGNK-WATIARYLT-GRSDNAVKNRWNST 149
                      89******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.64248103IPR017930Myb domain
SuperFamilySSF466891.17E-3051146IPR009057Homeodomain-like
SMARTSM007178.7E-1752101IPR001005SANT/Myb domain
PfamPF002491.7E-165399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2355106IPR009057Homeodomain-like
CDDcd001673.82E-155599No hitNo description
SMARTSM007177.6E-14104152IPR001005SANT/Myb domain
PROSITE profilePS5129417.927106154IPR017930Myb domain
PfamPF002495.3E-13107149IPR001005SANT/Myb domain
CDDcd001671.66E-11107150No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDLLRRHFVQ ADIDAITSIR TSPRIPDYII AWAPEKDEGG GGGDVGRADG CKKTPWTQEE  60
DEALRRGVRE HGPKSWDAIA LALPGRASKS CRLRWCQHLS PELDSRPFTP EEDEEIIRRQ  120
HEFGNKWATI ARYLTGRSDN AVKNRWNSTL RKQQLGAHDT EAAADDQAVR VCLQLFPMTA  180
GVLEEEAEAA AAAEGDVATD LTLGLPGLGE ASAVDLSLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-30531534104C-Myb DNA-Binding Domain
1msf_C6e-30531534104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146291.11e-131transcription factor MYB44-like
TrEMBLM8BE661e-159M8BE66_AEGTA; Uncharacterized protein
STRINGEMT050581e-160(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-47myb domain protein 77