PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT05066

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 74aa MW: 8189.55 Da PI: 10.4327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT05066	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.3e-06	32	60	5	34
HHHHHHHHHHHHHHHHHHHHCTSCC.C...T CS HLH 5 hnerErrRRdriNsafeeLrellPk.askap 34 ++e E+ RR++++ e+L +l+Pk + +p EMT05066 32 KKESEKERRQHMKRLCEKLSSLIPKeD--NP 60 6899*********************44..34 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.8E-7	32	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-5	32	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MEVKAKPARG GKRTRASGGT AGAPTAKVLM EKKESEKERR QHMKRLCEKL SSLIPKEDNP 60 HAKEDGYLLA CLQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	2e-56	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183665.1	1e-36	uncharacterized protein LOC109769324
TrEMBL	M8AKN8	6e-46	M8AKN8_AEGTA; Uncharacterized protein
STRING	EMT05066	9e-47	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133