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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EMT05070 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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| Family | bHLH | ||||||||
| Protein Properties | Length: 247aa MW: 26665.4 Da PI: 6.6479 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 21.9 | 3.2e-07 | 82 | 148 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksLq 55
+ +E++RR +++ +L +l+P +s + ++ + + L A YIk+L+
EMT05070 82 ERKDVEKNRRLHMKGLCLKLSSLVPASSthhlrhyssssssppSSNKDAATQLDQLDSAAAYIKQLR 148
56889*********************777************96666666****************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 9.039 | 78 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.83E-8 | 80 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.3E-10 | 81 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 247 aa Download sequence Send to blast |
MEIQGSRPPE FACPAPYKEF DEAADEVWGK TDDEEDIAVP AKATHNRHDH EASTRQSDRG 60 GAAAGAMALD GSHHTTSSGK MERKDVEKNR RLHMKGLCLK LSSLVPASST HHLRHYSSSS 120 SSPPSSNKDA ATQLDQLDSA AAYIKQLRAR IEDLKRRKQA ALSGNTVGCS SSVSAGDYKS 180 QTAALPVIEV RHQDGTLDVA LASEAGRPFR LHEVMAVLEQ EGAEVSQRLV NNDRSNNAQV 240 SNHAGDC |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG670306 | 1e-84 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020201035.1 | 1e-120 | uncharacterized protein LOC109786888 | ||||
| TrEMBL | M8ATP2 | 0.0 | M8ATP2_AEGTA; Uncharacterized protein | ||||
| STRING | EMT05070 | 0.0 | (Aegilops tauschii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP829 | 36 | 133 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 6e-13 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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