PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT05112

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 206aa MW: 22485.9 Da PI: 8.3067

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT05112	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	78.4	1.6e-24	26	100	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + w++F+ r+ +a+g r++r+t sgyWka g+ v+s++g+ vg+kkt+vfy+grap g kt+W m+eyr+ EMT05112 26 HGEPWFYFCARQDGEARGGRPSRTTPSGYWKAAGTPGLVYSADGRPVGTKKTMVFYRGRAPAGAKTKWKMNEYRA 100 5678*********************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.068	1	117	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-32	3	105	IPR003441	NAC domain
Pfam	PF02365	3.4E-18	5	99	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MGELPAGYRF YPTEEELVHR GACAGHGEPW FYFCARQDGE ARGGRPSRTT PSGYWKAAGT 60 PGLVYSADGR PVGTKKTMVF YRGRAPAGAK TKWKMNEYRA FDDDGEERVQ LVPAVHKVRQ 120 LAARRPCTAA AGGCRSEDPA SSSAALASPN QDVEVGKGQK RKRHAANDVP SSSDAYRSVQ 180 QQQKQGGADE ELADGMTDWA ELFDWV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-21	4	102	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-21	4	102	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-21	4	102	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-21	4	102	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	7e-21	4	102	20	147	NAC domain-containing protein 19
3swm_B	7e-21	4	102	20	147	NAC domain-containing protein 19
3swm_C	7e-21	4	102	20	147	NAC domain-containing protein 19
3swm_D	7e-21	4	102	20	147	NAC domain-containing protein 19
3swp_A	7e-21	4	102	20	147	NAC domain-containing protein 19
3swp_B	7e-21	4	102	20	147	NAC domain-containing protein 19
3swp_C	7e-21	4	102	20	147	NAC domain-containing protein 19
3swp_D	7e-21	4	102	20	147	NAC domain-containing protein 19
4dul_A	7e-21	4	102	17	144	NAC domain-containing protein 19
4dul_B	7e-21	4	102	17	144	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359954	2e-95	AK359954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1107F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158921.1	1e-112	NAC domain-containing protein 90-like
TrEMBL	M8BQ66	1e-150	M8BQ66_AEGTA; NAC domain-containing protein 90
STRING	EMT05112	1e-151	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-38	NAC domain containing protein 90