PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05991
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 131aa    MW: 13946.7 Da    PI: 5.6928
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05991genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-1174100127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               ++++ C +++rtG C++G +C+F+H++
  EMT05991  74 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 100
               5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.70973101IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-573100IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-975100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-678102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-579100IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDEAGRASAP AVVTVTASAA APSPPPPPPP ATATAAAADP PSPDPDALYE EGIWQQMAMS  60
SGATMQSGPY PVRPGEPDCT YYLRTGLCRF GMSCRFNHPQ DRNTAIASAR MKGEYPERVG  120
QPECQKLLFR H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679461e-166AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.11e-82zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB51e-53C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLM8AN802e-90M8AN80_AEGTA; Zinc finger CCCH domain-containing protein 12
STRINGEMT059913e-91(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17256611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-34zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]