PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06308
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family TALE
Protein Properties Length: 121aa    MW: 14492.7 Da    PI: 10.0842
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06308genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.8e-1045831755
              HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55
              e+ +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  EMT06308 45 EMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 83
              5566789*****************************985 PP
2ELK39.21.5e-13324122
       ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
              ELKh+Ll+KYsgyL+sLkqE+s
  EMT06308  3 ELKHHLLKKYSGYLSSLKQELS 24
              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121311.331323IPR005539ELK domain
PfamPF037891.8E-10324IPR005539ELK domain
SMARTSM011884.9E-7324IPR005539ELK domain
PROSITE profilePS5007112.6652386IPR001356Homeobox domain
SuperFamilySSF466892.35E-202499IPR009057Homeodomain-like
SMARTSM003896.1E-132590IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-282887IPR009057Homeodomain-like
CDDcd000867.34E-123587No hitNo description
PfamPF059202.6E-174382IPR008422Homeobox KN domain
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MEELKHHLLK KYSGYLSSLK QELSKKKKKG KLPKDARQQL LSWWEMHYKW PYPSESQKVA  60
LAESTGLDLK QINNWFINQR KRHWKPSDEM QFVMMDAYHP PNAAFYMDGH FVNDSGLYRF  120
G
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2245000.0AF224500.1 Triticum aestivum KNOTTED-1-like homeobox protein d (knox1d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147582.13e-84homeobox protein KNOX3
SwissprotQ434847e-76KNOX3_HORVU; Homeobox protein KNOX3
TrEMBLA0A3B6JFV47e-83A0A3B6JFV4_WHEAT; Uncharacterized protein
TrEMBLA0A453H9G56e-84A0A453H9G5_AEGTS; Uncharacterized protein
TrEMBLA0A453H9X97e-83A0A453H9X9_AEGTS; Uncharacterized protein
TrEMBLM8BHW42e-84M8BHW4_AEGTA; Homeobox protein KNOX3
TrEMBLQ9LE117e-83Q9LE11_WHEAT; KN1 homeobox protein
STRINGEMT063083e-85(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.16e-44KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Müller KJ, et al.
    The barley Hooded mutation caused by a duplication in a homeobox gene intron.
    Nature, 1995. 374(6524): p. 727-30
    [PMID:7715728]
  2. Krusell L,Rasmussen I,Gausing K
    DNA binding sites recognised in vitro by a knotted class 1 homeodomain protein encoded by the hooded gene, k, in barley (Hordeum vulgare).
    FEBS Lett., 1997. 408(1): p. 25-9
    [PMID:9180261]