PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06404
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 463aa    MW: 52620.3 Da    PI: 6.6808
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06404genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.2e-15991781499
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               + +++p + +++ +g+   + +++le+++g s ++ +   k++++ vlt GW++F +  +L+ gD+++F+++g+s+f  +v++f+k
  EMT06404  99 DSMIIPEEVVRRLKGE--IPGEIKLETRNGYSHTIVV--AKNQEKLVLTVGWRQFIENYDLQIGDSLMFRYKGTSQF--NVMIFDK 178
               569********99777..5568***************..**********************************9999..9999986 PP
2B346.75.9e-152443251198
               HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ +++p +f+++++g+   +++++le+++ rs+ + +   k+ g  vlt GW +Fv   gL+ gD++vF+++g+s+f  +v +f+
  EMT06404 244 VFQHEMIIPEEFLQRFKGE--FPREMILETQNCRSYVIGV--AKNNGNLVLTVGWGKFVGTFGLEMGDTIVFRYIGNSRF--NVIIFD 325
               44567***********888..7789***************..**********************************9999..887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1982178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-1983178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06986179IPR003340B3 DNA binding domain
CDDcd100173.69E-1487177No hitNo description
SMARTSM010196.1E-989179IPR003340B3 DNA binding domain
PfamPF023621.2E-1399178IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-19230326IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-17231326IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.252234327IPR003340B3 DNA binding domain
CDDcd100174.66E-13235325No hitNo description
SMARTSM010193.6E-6236327IPR003340B3 DNA binding domain
PfamPF023624.8E-13244325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGEGDGDVVM HAGGQRDGHG GPAVSALHAL SMGHHLEPSV GSGEAPWAMG KTIGGGVRGA  60
AKRMGMSFGS CKLPDEQYYK HLDDEKKHFL VLMLGDFEDS MIIPEEVVRR LKGEIPGEIK  120
LETRNGYSHT IVVAKNQEKL VLTVGWRQFI ENYDLQIGDS LMFRYKGTSQ FNVMIFDKLG  180
REKALSVVLD PFLHRVQDRR NEAHEIGSSK KMDVPWERCK SRTEYHYANL DDEKKYFLVH  240
MMGVFQHEMI IPEEFLQRFK GEFPREMILE TQNCRSYVIG VAKNNGNLVL TVGWGKFVGT  300
FGLEMGDTIV FRYIGNSRFN VIIFDELGCE KTIETQPFSI GKGMRMESPR LQMEMDKSWE  360
DNNTVLSVSS HESSGDPVYY EEECGVREVP GSDFKVRKKK ARLSSNQKEQ LKDGYFISHK  420
TKLTSTQKEM VKQMVQSIYS EIPIFVAVMS KCNVVVEFYL VPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186790.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
SwissprotQ6Z0D95e-51Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLM8AYD20.0M8AYD2_AEGTA; B3 domain-containing protein
STRINGEMT064040.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]