PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06503
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 219aa    MW: 23987.9 Da    PI: 6.5812
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06503genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05187209123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ykC++C+++F+++  +  H++ H
  EMT06503 187 YKCKICDRTFNSSQAYGGHMKFH 209
               9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-5186213No hitNo description
PfamPF139121.2E-6187210IPR007087Zinc finger, C2H2
SMARTSM003550.004187209IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDPNGSYPNK VTSTESEANV ALSTLPPNLP DAQFTPLSMA NTHNSNPNHR EIIENQPEML  60
SYQAFLSNPI KNYFGSSDLR RILSMESPSV TSLLQGDPVA VVHAHLNTIG ATDDGPIFKI  120
PTTHVIEEQQ NIPHGALTHD ATDGVPTPLA PFMTSPHGLR EDKTPIGGPN VVTESVIVHD  180
STSLCKYKCK ICDRTFNSSQ AYGGHMKFHS IERKKRFQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231926.27e-54uncharacterized protein LOC104582794
TrEMBLA0A453E7J91e-162A0A453E7J9_AEGTS; Uncharacterized protein
TrEMBLM8BIC71e-162M8BIC7_AEGTA; Uncharacterized protein
STRINGEMT065031e-162(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612