PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06705
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 207aa    MW: 22883.9 Da    PI: 10.7767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06705genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d +  +G  +W+t++ + g+ R +k+c++rw +yl
         EMT06705 15 KGLWSPEEDQKLRDFIVCYGDSCWSTVPVKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding50.83.8e-1669113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g ++ eE+e    +++ lG++ W+ Ia++++ gRt++++k++w++yl
         EMT06705  69 GMFSREEEETVMSLHATLGNK-WSQIAQHLP-GRTDNEVKNYWNSYL 113
                      56999****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5151062IPR017930Myb domain
SuperFamilySSF466893.19E-2713109IPR009057Homeodomain-like
SMARTSM007171.7E-81464IPR001005SANT/Myb domain
PfamPF002493.1E-111562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-191669IPR009057Homeodomain-like
CDDcd001672.09E-81862No hitNo description
PROSITE profilePS5129424.25463117IPR017930Myb domain
SMARTSM007172.6E-1367115IPR001005SANT/Myb domain
PfamPF002494.4E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2570116IPR009057Homeodomain-like
CDDcd001671.16E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VCYGDSCWST VPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSREEEETVM SLHATLGNKW SQIAQHLPGR TDNEVKNYWN SYLKKRVEGA  120
RSPAKPAASD APRTRRPTPS ESGRERITVD QPSNSGSSGP RRVVVAADES SSLTVPGAAA  180
SIRPHAPVAP QGHVRGLARH GHSGCRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26151187109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705130.0AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156857.11e-127transcription factor LAF1-like
SwissprotQ9M0K47e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLM8AYF01e-151M8AYF0_AEGTA; Uncharacterized protein
STRINGEMT067051e-152(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-61myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]