PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT06920

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

ERF

Protein Properties

Length: 183aa MW: 19985.9 Da PI: 6.7833

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT06920	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.8e-19	82	134	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd ++ r +lg+f+taeeAa+a+++ + +++g+ EMT06920 82 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRKWLGTFDTAEEAARAYDRSAYAMRGH 134 69******.7*****3...2236************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.66E-27	82	142	No hit	No description
Pfam	PF00847	7.0E-14	82	134	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-28	83	142	IPR001471	AP2/ERF domain
SMART	SM00380	8.0E-31	83	147	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.221	83	141	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-21	83	142	IPR016177	DNA-binding domain
PRINTS	PR00367	4.3E-9	84	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-9	107	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MATICEAKCR PEKENADKGL QKLKDHESQP DPNRSTLNLN QVDPERRAGD TNHTSSAVDN 60 QVMEGGGGWG DQAGKDGGGE STKYRGVRRR PSGKFAAEIR DSSRQSVRKW LGTFDTAEEA 120 ARAYDRSAYA MRGHLAVLNF PAEARNYVRG GSSSSQQQVI ELECLDDAVL QDMLRDGGGG 180 RNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-30	71	169	2	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006162	2e-33	AP006162.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1331F11.
GenBank	AP014965	2e-33	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	2e-33	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193660.1	1e-83	ethylene-responsive transcription factor 14-like
Swissprot	Q9LTC5	4e-30	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	M8AYZ5	1e-133	M8AYZ5_AEGTA; Ethylene-responsive transcription factor ERF098
STRING	EMT06920	1e-134	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-29	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]