PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07074
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 254aa    MW: 28288.5 Da    PI: 5.1937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07074genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ + ++G g+W++++r  g+ R++k+c++rw +yl
         EMT07074 20 RGLWSPEEDEKLYNHIIRYGVGCWSSVPRLAGLERCGKSCRLRWINYL 67
                     788*******************************************97 PP
2Myb_DNA-binding50.74.2e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v ++k lG++ W+ Ia+ ++ gRt++++k++w++
         EMT07074  73 RGSFSQQEEDLIVSLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 116
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-231370IPR009057Homeodomain-like
PROSITE profilePS5129418.2181567IPR017930Myb domain
SuperFamilySSF466895.99E-2917114IPR009057Homeodomain-like
SMARTSM007178.7E-131969IPR001005SANT/Myb domain
PfamPF002493.8E-142067IPR001005SANT/Myb domain
CDDcd001675.58E-112367No hitNo description
PROSITE profilePS5129424.90868122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2571122IPR009057Homeodomain-like
SMARTSM007176.5E-1572120IPR001005SANT/Myb domain
PfamPF002492.3E-1473116IPR001005SANT/Myb domain
CDDcd001671.84E-1075115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGREAAAAVA CSSNKPKLRR GLWSPEEDEK LYNHIIRYGV GCWSSVPRLA GLERCGKSCR  60
LRWINYLRPD LKRGSFSQQE EDLIVSLHKI LGNRWSQIAS QLPGRTDNEI KNFWNSCIKK  120
KLRQQSIDPT THEPLNDAAA DAEPHDECKQ LVSAAEDGCF GGPGGGDSSS NSTGTGTGTW  180
TCGNVEPLPH MDMFCDDAEP YPFDPTKFSP WHQQHAPDDD RGSAVFPVRS LSRDLPESCF  240
ELARGALEDE FDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30161223108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925931e-151FP092593.1 Phyllostachys edulis cDNA clone: bphylf046j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192081.11e-166myb-related protein Hv33-like
SwissprotP200272e-76MYB3_HORVU; Myb-related protein Hv33
TrEMBLM8BJW80.0M8BJW8_AEGTA; Myb-related protein Hv33
STRINGEMT070740.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-71myb domain protein 86