PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07081
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25279.1 Da    PI: 10.1842
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07081genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.62.7e-071150342
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              i n+s r   + k  + ++KKA E+    da+++v+++++
  EMT07081 11 IRNNSARRNALKKHTKILMKKAGEVAAVPDAKACVVVYGE 50
              889999999*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.297150IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-12394IPR002100Transcription factor, MADS-box
PfamPF003192.7E-51150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARKKVALRY IRNNSARRNA LKKHTKILMK KAGEVAAVPD AKACVVVYGE GMAVPEVFPS  60
HAEAVAILNQ FKSMQEEARL KKTMDQESIL RERIVKLRDQ VQKARREQQD QDAKILLYKA  120
LKSGHIPDNI EELTALGSKV DSILKSLGEC TQKMSGHPPV DQAQAPYITN GMGMGPPIMY  180
QAPPQQQEGR LNTVRFERAP TTVIYNSDNT GGHDGNNVVF SRGHMNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166830.11e-170agamous-like MADS-box protein AGL80
TrEMBLA0A3B6Q9091e-169A0A3B6Q909_WHEAT; Uncharacterized protein
TrEMBLA0A453MRM41e-169A0A453MRM4_AEGTS; Uncharacterized protein
TrEMBLM8AZC01e-169M8AZC0_AEGTA; MADS-box transcription factor PHERES 2
STRINGEMT070811e-169(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-17AGAMOUS-like 38