PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07628
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 480aa    MW: 53508.1 Da    PI: 5.3176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07628genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10279325354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               +a+ + Er RR+++N ++ +Lr l P++     +K++ a+++  A+eYI +L
  EMT07628 279 KANFATERERREQLNVKYKTLRMLFPNP-----TKNDRASVVGDAIEYIDEL 325
               68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.16276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-11279342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-8279325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-7282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-9283334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-7285330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MIWIEGARHC FVKMIVGGDY FEGSHDHNLM TGSLTHDSSL APKCNDNTNI ELQRFKVQSF  60
SADILSDSTN LSSEAARAIN HLQHQLGIGL EQDMPPVETA TWDTSICTIQ DQIINHQLSE  120
DPQNILVQQQ IQQYDAALYP NSGYTPAPDL LNLLHCTVAP VFPATASVFG DTALSGGTNY  180
LDLNGEFTGV AAIPDSGLMY TSDPALQLGY HAAPSHALKD ICHSLPQNYG LFPSEDERDV  240
MLGVGSVGGD LFQDMDDRQF ETVLEGRRGK GEFGKGKGKA NFATERERRE QLNVKYKTLR  300
MLFPNPTKND RASVVGDAIE YIDELNRTVK ELKILVEQKW HGTNRRRIRK LDEEAAADGE  360
SSSMRPMRDE QDNQLDGAIR SSWVQRRSRE CHVDVRIVEN EINIKLTEKK KANSSLLHVA  420
KVLDEFHLEI IHVVGGIIGD HYIFMFNTKV TEGSSVYACA VAKRILQAVD AQHQALDIFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152149.10.0transcription factor EAT1-like
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A2X0U0320.0A0A2X0U032_WHEAT; Uncharacterized protein
TrEMBLM8BXG00.0M8BXG0_AEGTA; Transcription factor bHLH91
STRINGEMT076280.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-43bHLH family protein