PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08502
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 291aa    MW: 33429.3 Da    PI: 5.0974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08502genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-111902651190
               HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
               ++++r +  ++f++++  + +es+t+tl d++ + W+  ++y ++   + vl++GW   + +n+L+  D++vF+l ++ e 
  EMT08502 190 MERARRS--NRFMKTFL-P-KESRTMTLWDPQAKPWKAWYKYtCGECPHAVLSAGWGTLAMENNLEKWDMCVFELLDQ-EY 265
               5555444..78886664.4.3678****************9976666679************************8753.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.192178275IPR003340B3 DNA binding domain
CDDcd100178.36E-15196273No hitNo description
Gene3DG3DSA:2.40.330.102.9E-13197273IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-9197271IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-12197271IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MHMVLPPEEE DAHTNTSAVG TPQNKASEEE EAEEEEDALS ESLENEEDSE SRMCCDDALE  60
PTQQQQDYRH KTDDEESEHR PTKKSKFEEI RSPFGDSASK AASLGDNFVE FASRPSKESQ  120
AEGKSSAAPL IVYTRHKSFG NKYGMEAQFT MFNKSNGENQ PGRVLIRVTR RLGLTSQRRP  180
VTQREKEDAM ERARRSNRFM KTFLPKESRT MTLWDPQAKP WKAWYKYTCG ECPHAVLSAG  240
WGTLAMENNL EKWDMCVFEL LDQEYNIKLH IHKVFLMITP CVLAPKPRID E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731481e-42AK373148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169976.11e-119uncharacterized protein LOC109755480
TrEMBLM8AVK30.0M8AVK3_AEGTA; B3 domain-containing protein
STRINGEMT085020.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264526