PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08831
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 133aa    MW: 14092.1 Da    PI: 10.4753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08831genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002591113123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               +kC+ Cg  F     L  H+r+H
  EMT08831  91 HKCHVCGLEFEMGQALGGHMRRH 113
               79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-63959IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-588115No hitNo description
PfamPF139121.5E-1090115IPR007087Zinc finger, C2H2
PROSITE profilePS501578.97491118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MRQYRDEAGA SSSLSLSLSL GAVADHSKKM RRGGAEGEFV CKTCGRSVPS FQALGGHRTT  60
PLRGRNGLAL GLAAGTDQPA TKKTADQKQA HKCHVCGLEF EMGQALGGHM RRHREHGAAT  120
TAQAPPVLLQ LFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508951e-31AK250895.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100e15, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198416.12e-82zinc finger protein ZAT8-like
TrEMBLM8B4D92e-91M8B4D9_AEGTA; Zinc finger protein 1
STRINGEMT088313e-92(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-18C2H2 family protein