PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08833
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 217aa    MW: 23003.9 Da    PI: 11.8602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08833genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000816183123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg+ F +   L  H  +H
  EMT08833 61 FVCKTCGRAFETFQALGGHRTSH 83
              89*********999998888777 PP
2zf-C2H211.20.0012112134123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C++C+  F +   L  H+r+H
  EMT08833 112 HDCHICTLGFETGQALGGHMRRH 134
               56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-55787No hitNo description
SMARTSM003550.426183IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-106185IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3466188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576677.03E-5109138No hitNo description
PROSITE profilePS501578.683112139IPR007087Zinc finger, C2H2
SMARTSM003551.1112134IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-8112137IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGEGMKRARE EEPAASLALS LITDSSTSTT TSADSAGAPA AAPRKRARRG RVVATSGEGE  60
FVCKTCGRAF ETFQALGGHR TSHLRGRYGL ELGVGVARAI GERQRHDDKQ QHDCHICTLG  120
FETGQALGGH MRRHREEMAL DRWVALSDQG GGAPGRRRPV HHRHTGLRAR PGARRAHAAA  180
PRGDGARPVG RAVGSGGGAP GRRRPAACFA RAVRLAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591611e-127AK359161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090O23.
GenBankAK3666281e-127AK366628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198419.12e-79zinc finger protein ZAT5-like
TrEMBLM8C0X81e-149M8C0X8_AEGTA; Uncharacterized protein
STRINGEMT088331e-150(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-18C2H2 family protein