PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08965
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 780aa    MW: 88232.3 Da    PI: 7.8335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08965genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-161462241498
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               + +++p +f++++ g+   +++++le+++g s+++ +   k++++ vl++GW  Fvk  +L   D vvF+++g+s+f   v vf+
  EMT08965 146 QEMIVPDEFLRRFRGE--IPTEIKLETRNGHSYTIGV--AKYPDKLVLQAGWGTFVKTYDLHMDDCVVFRYKGNSQF--DVIVFD 224
               46899********776..7789***************..**********************************9999..776666 PP
2B349.11e-15464555196
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
               f+ v+ + +v+ ++ l+++kk++++h g+ke+   +   ++ g++W+v++  + +++   + +GW++Fvk+n++++gD+++F+l +  +  ++ v++
  EMT08965 464 FVAVMRRFNVTGTCTLTFSKKYVQTHVGDKERR--VC-LQRFGKRWDVQF--SSSREVKRIVSGWRKFVKDNDVETGDICIFELLKIdEMCTMEVHI 555
               5566777788999*************7787664..66.557*********..6666667789*********************76443444466666 PP
3B339.31.1e-12685775599
               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               + + +v+ +  l+++k++++++ g++ +s  +    ++g++ +v+l   ++++     +GW +F+k+ngL+ gD++++++ ++ +e +++v+++r+
  EMT08965 685 MQKTNVTGRFSLSISKRYVRRYLGDEVRS--IW-LERDGERCQVTL--GRGPQNNRVVGGWVKFAKENGLRPGDVCLLERLRHcKECTMKVHIVRR 775
               56678889999***********8887776..55.457*********..9999999999*********************99988999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-18130225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-17132224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.898133226IPR003340B3 DNA binding domain
SMARTSM010193.5E-4136229IPR003340B3 DNA binding domain
PfamPF023627.0E-12147222IPR003340B3 DNA binding domain
CDDcd100175.39E-15148224No hitNo description
Gene3DG3DSA:2.40.330.102.0E-19456558IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19459548IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-17462556No hitNo description
PfamPF023621.2E-13464556IPR003340B3 DNA binding domain
SMARTSM010194.4E-7464559IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07464559IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-15676774IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15676776IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-16679774No hitNo description
SMARTSM010199.2E-6681776IPR003340B3 DNA binding domain
PROSITE profilePS508639.234681776IPR003340B3 DNA binding domain
PfamPF023628.9E-11683775IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MCYVLQIMYA DSNNVAEYEA LLHGLCMFLI DRVAQDLTVH AHHILSLGNV SVDSKTHMVA  60
SSISRLVGSE GSARVPRFPL ARIPGSPVDS LKCQIFAADG FSLTVQCMSS GKMGCERCER  120
RDELDYCNLD DREKHFLMFI VDDCGQEMIV PDEFLRRFRG EIPTEIKLET RNGHSYTIGV  180
AKYPDKLVLQ AGWGTFVKTY DLHMDDCVVF RYKGNSQFDV IVFDRFGREK PFSVIRDNAP  240
PVQESHNSGT ENLDRSHGHS QPMEVQSPIA TANHSDRRPQ PMRMQPPTEN ANPSHAHPQP  300
MRMQPPTENL DDPVGFSPPT ENVNNLFGHS QPTQMQPSTE AVDHFVQMQP STEAVDHSNG  360
HAQTMQMQPS SEVVDHSNGH AQTMQMQLFC RPTKLRQTKL QWDYSSMGNK TATSPSGDSL  420
SSEHDIEGCA SPRYTLIHNA SLNTVQKEEV DEKVKSIHED NPIFVAVMRR FNVTGTCTLT  480
FSKKYVQTHV GDKERRVCLQ RFGKRWDVQF SSSREVKRIV SGWRKFVKDN DVETGDICIF  540
ELLKIDEMCT MEVHIIHAKD FGRPSQIGGR SVEGRCKEAT TKTVEPSHSR PQLVQMQLRN  600
ASVEDSYSRP QPMEMQSPSK ERKIRVETVN SSPGNEGDSS MSEDSVTLTG CIGVHLRRIP  660
LIQKKVVKQK VDLIGSEIPI CVLVMQKTNV TGRFSLSISK RYVRRYLGDE VRSIWLERDG  720
ERCQVTLGRG PQNNRVVGGW VKFAKENGLR PGDVCLLERL RHCKECTMKV HIVRRVKRAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174612.10.0putative B3 domain-containing protein Os08g0325100
TrEMBLM8B5T20.0M8B5T2_AEGTA; Putative B3 domain-containing protein
STRINGEMT089650.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-13B3 family protein